Install the package devtools if you don't have it (it includes package remotes) and then install the specific version that will work in your current R. You can look up that information on the CRAN page for the specific package archives. What is the purpose of non-series Shimano components? @joycekang on which operating system are you installing pkgdown, and what version are you installing (CRAN or GitHub)? How can I use it? Package bigmemory not installing on R 64 3.0.2, package "makeR" is not available (for version 3.0.2), package RTN is not available (for R version 3.0.1), package twitterR is not available (for R version 3.1.0), How to install 'Rcpp, package? Package names are case sensitive in R. 2. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. I made the mistake of forgetting to put repos=NULL when installing the R package from source code. There is a package TSA from CRAN. Can I tell police to wait and call a lawyer when served with a search warrant? Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Below are the commands I have run and the respective outputs: To verify the proper installation of Cairo: You are probably do not want to read the messages which are shown during compilation. Is the bigvis package for R not available for R version 3.0.1? For the Nozomi from Shinagawa to Osaka, say on a Saturday afternoon, would tickets/seats typically be available - or would you need to book? Connect and share knowledge within a single location that is structured and easy to search. Did not work for me in installing the package. The main problem of that was that I couldnt install RCurl. Connect and share knowledge within a single location that is structured and easy to search. Version: 1.5-9.7: Depends: R ( 4.1.0) . How to view hierarchical package structure in Eclipse package explorer, How to unload a package without restarting R. How to find out which package version is loaded in R? ), 9. package syncwave/mvcwt is not available (for R version 3.0.2), package diamonds is not available (for R version 3.0.0). Package fribidi was not found in the pkg-config search path. Warning message: package (s) not installed when version (s) same as current; use `force = TRUE` to re-install: 'limma' Please help and let me know to find solution. - the incident has nothing to do with me; can I use this this way? and consider updating your R installation to the current version. 1 Answer Sorted by: 0 There is a package TSA from CRAN. see the ideas at Q&A for work. Another possible warnings message you may get when interacting with CRAN mirrors is: Warning: unable to access index for repository Which may indicate the selected CRAN repository is currently be unavailable. Why do small African island nations perform better than African continental nations, considering democracy and human development? Ah, I get it now. DESeq2 installation Error (ERROR: dependency locfit is not available for package DESeq2), Traffic: 186 users visited in the last hour, User Agreement and Privacy In my ~/.Renviron I had the following lines (from https://support.rstudio.com/hc/en-us/articles/200488488-Configuring-R-to-Use-an-HTTP-or-HTTPS-Proxy) causing the problem: solved the problem. In a case like this, the alternative to upgrading the R installation is the solution already mentioned. What is \newluafunction? The workaround is to set repository manually: This solution might break R but here is an easiest solution that works 99% of time. If you are behind a proxy server check the configuration using Sys.getenv("http_proxy") within R. from the parent directory of DESCRIPTION) e.g. I don't have any problem resorting to brew, but this does seem a bit off-track. If so, how close was it? what is wrong and how should I handle it ? pinky1: ERROR: dependency 'locfit' is not available for package 'TSA' The locfit package (which is a package dependency) requires R >= 3.5 and since you are using an even older R version, you would have to update R to be able to install it. "package rhipe is not available (for R version 3.1.2)". Follow Up: struct sockaddr storage initialization by network format-string, The difference between the phonemes /p/ and /b/ in Japanese. RHIPE on the other hand isn't in a CRAN-like repository and has its own installation instructions. - the incident has nothing to do with me; can I use this this way? Note that when using RStudio, you get this warning as well when installing from another repo than CRAN. rev2023.3.3.43278. R. Here's how to install it via apt for ubuntu: The easiest way to resolve this problem is to install a binary, e.g. A library is a place (directory) where R knows to find packages it can use, It may have a dependency on a more recent version of R (or one of the packages that it imports/depends upon does). Install from local (i.e. Are there tables of wastage rates for different fruit and veg? Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. Find centralized, trusted content and collaborate around the technologies you use most. You mention 20.04 in the title, but then report your release as 14.04 via tag? It's incredible but my solution was to restart R and try again. @bli you're right, I stand corrected. 11. ERROR: dependency 'rlang' is not available for package 'dbplyr'. Running the command sudo dpkg-query -l | grep libcairo2-dev also shows that the Cairo package is fully installed. ), same here: thank you Limma Packaging. package is not available (for R version 2.15.2) Will Gnome 43 be included in the upgrades of 22.04 Jammy? Look at. It almost always works for me when I use bioconductor as source and then invoke biocLite. Staging Ground Beta 1 Recap, and Reviewers needed for Beta 2, Unable to install packages in latest version of RStudio and R Version.3.1.1, package pbkrtest is not available (for R version 3.2.2), R packages rgdal / rgeos "is not available (for R version 3.1.1)". It only takes a minute to sign up. You can turn off this check by setting. I tried to install pkgdown via devtools fresh on a new OS X (Catalina) machine, but the installation seems to fail (non-zero exit status) with error implications for packages such as freetype2 and systemfonts, even with dependencies set: The text was updated successfully, but these errors were encountered: The error message from {systemfonts} suggests that you need to install the freetype2 library on your machine: If you don't have homebrew, I would suggest to install it (https://brew.sh/) and then run brew install freetype from your terminal. Assuming that it is reasonably compliant with CRAN standards, you can still download it using install.packages; you just have to specify the repository URL. Not the answer you're looking for? I suggest using Hadley Wickham's devtoolspackage. Usually stated dependency on R version is there for a reason, it may be wise to check what such change will potentially break. hello, thanks for helping! Implements a range of statistical methodology based on the negative binomial distributions, including empirical Bayes estimation, exact tests, generalized linear models and quasi-likelihood tests. For some reason, the package was still there, but install.packages was only looking at the updated (and incompatible) version. Why doesn't R think that the package is available? I've examined documentation for broom and I didn't see anything saying that it explicitly is only supported by some previous version. DESeq2 installation Error (ERROR: dependency locfit is not available for package DESeq2), Traffic: 822 users visited in the last hour, https://cran.r-project.org/src/contrib/Archive/locfit/, User Agreement and Privacy How to handle a hobby that makes income in US. Perhaps you don't really want a package. Differential expression analysis of RNA-seq expression profiles with biological replication. If pkg-config. Is there a single-word adjective for "having exceptionally strong moral principles"? Turns out, the CRAN snapshot they have on the HPC is from Jan. 2018 (almost 2 years old) and indeed pkgdown did not exist then. Installation instructions to use this Extending Mensur's answer, here are previous releases of locfit: https://cran.r-project.org/src/contrib/Archive/locfit/. Is the God of a monotheism necessarily omnipotent? Powered by Discourse, best viewed with JavaScript enabled, Problems with tidyverse load - Error: package or namespace load failed for tidyverse in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): namespace scales 0.4.0 is already loaded, but >= 0.4.1 is required, ERROR: dependency rlang is not available for package dbplyr - R 3.4.3, removing 'C:/Users/dimarcantonio/Documents/R/win-library/3.2/dbplyr', removing 'C:/Users/dimarcantonio/Documents/R/win-library/3.2/hms', removing 'C:/Users/dimarcantonio/Documents/R/win-library/3.2/tidyverse'. At first I had about 10 errors regarding packages I couldnt install. R . For problems with Ubuntu, check the README: This solution worked for me for debian for the package, When I try install.packages('foobarbaz', repos=NULL) I get error " Error in install.packages("pair", repos = NULL) : type == "both" cannot be used with 'repos = NULL'", Thanks for the comment - I think I forgot to write the, This way do solved my problem, but still update my R to the newest version(from. Is there a single-word adjective for "having exceptionally strong moral principles"? package twitterR is not available (for R version 3.1.0) Post questions about Bioconductor It allows loading package from given directory: (as lib is unspecified) Asking for help, clarification, or responding to other answers. One thing that happened for me is that the version of R provided by my linux distribution (R version 3.0.2 provided by Ubuntu 14.04) was too old for the latest version of the package available on CRAN (in my case, plyr version 1.8.3 as of today). Equation alignment in aligned environment not working properly. Additionally, some packages are available only via the sources for some or all platforms. Thats whats the obvious and what got through my mind at first but taking under consideration that I just got into the field I thought that this is no way whats going on and that it has to do with some deeper R knowledge. You signed in with another tab or window. Suspected that this was the case. Hello everybody! @Tmacphee13 @joycekang, installing on Linux, you need to install libharfbuzz using your Linux package distribution manager (e.g. Try installing: * deb: libfontconfig1-dev (Debian, Ubuntu, etc), If --static freetype2 is already installed, check that, PATH and PKG_CONFIG_PATH contains a --static freetype2.pc file. How to fix "Attempted relative import in non-package" even with __init__.py, Install package from source throws "package not available" in R, package slidify not available as a binary package for R version 3.1.3, package gplots is not available for R version 3.0.2, warning: package grid is not available (for R version 3.1.2), not able to install fable package (error: is not available (for R version 3.4.2). Sign in Have a question about this project? To learn more, see our tips on writing great answers. I am trying to install the R package ComplexHeatmap but I keep getting the error message that the the dependency Cairo is not available. try this install_github("YosefLab/ImpulseDE2"). You can select a different mirror with chooseCRANmirror () and try the installation again. limit n,mnm Maybe my work network somehow blocks these types of requests - I have to do something similar with Python and PIP. Your package is in a non-standard repository (e.g. In my case the solution was to simply upgrade R. I found a slight variation on #6 package is out of date from the excellent solution by @Richie Cotton. Unfortunately, it seems that I'd have to replicate the process for other packages with non-zero status as well: I wonder if these interdependencies can be resolved within R? But it still does not work. Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Ideally, you would update your R installation to the latest version (3.4.3). I am trying to install DESeq2 and I keep getting errors. To view documentation for the version of this package installed Hisat21.1 , SQLlimitoffset (or I wonder if its because I installed R via Homebrew? slidify package not available in R 3.1.2? The problem was not the version of R, it was the repos parameter. To see which repositories R will look in for your package, and optionally select some additional ones. Bioconductor release. package 'Rbbg' is not available (for R version 2.15.2), package is not available (for R version 2.15.2), package doMC NOT available for R version 3.0.0 warning in install.packages, Dependency Rglpk is not available for package fPortfolio. How would "dark matter", subject only to gravity, behave? How to find out which package version is loaded in R? '?repositories' for details. As well as RNA-seq, it be applied to differential signal analysis of other types of genomic data that produce read counts, including ChIP-seq, ATAC-seq, Bisulfite-seq, SAGE and CAGE. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Connect and share knowledge within a single location that is structured and easy to search. Configuration failed to find the --static freetype2 library. package in your R session. Author: Yunshun Chen, Aaron TL Lun, Davis J McCarthy, Matthew E Ritchie, Belinda Phipson, Yifang Hu, Xiaobei Zhou, Mark D Robinson, Gordon K Smyth, Maintainer: Yunshun Chen , Gordon Smyth , Aaron Lun , Mark Robinson . So, maybe try updating your operating system? What can I do to resolve the issue? Is the plyr package for R not available for R version 3.0.2? Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide. Cloning the repository woudnt do it either. Disconnect between goals and daily tasksIs it me, or the industry? Warning: cannot remove prior installation of package 'scales' The downloaded binary packages are in C:\Users\admin\AppData\Local\Temp\RtmpQXIjyl\downloaded_packages On Windows, this is most easily done via the installr package. as described in this SO answer by imanuelc and the Details section of ?install.packages. when I try to install the package , it returns a message like this: Warning message: In .inet_warning(msg) : package 'ImpulseDE2' is not available for Bioconductor version '3.14' A version of this package for y. From searching I managed to install RCurl but I still get the bellow error. enter citation("edgeR")): To install this package, start R (version is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: -------------------------- [ERROR MESSAGE] ---------------------------, --------------------------------------------------------------------, ERROR: configuration failed for package systemfonts, * removing /usr/local/lib/R/4.0/site-library/systemfonts, installation of package systemfonts had non-zero exit status, ERROR: dependency systemfonts is not available for package textshaping, * removing /usr/local/lib/R/4.0/site-library/textshaping, installation of package textshaping had non-zero exit status, ERROR: dependencies systemfonts, textshaping are not available for package ragg, * removing /usr/local/lib/R/4.0/site-library/ragg, installation of package ragg had non-zero exit status, ERROR: dependency ragg is not available for package pkgdown, * removing /usr/local/lib/R/4.0/site-library/pkgdown, installation of package pkgdown had non-zero exit status, (converted from warning) installation of package systemfonts had non-zero exit status.